Alignment of alleles: Channel catfish (Ictalurus punctatus) IGHV8S3

When several alleles are shown, the nucleotide mutations and amino acid changes for a given codon are indicated in red letters. These polymorphic mutations are reported in Tables of alleles.
Dashes indicate identical nucleotides. Dots indicate gaps according to the IMGT unique numbering. Blanks indicate partial sequences (blanks at the 5' and/or 3' end).

                                  1   2   3   4   5   6   7   8   9  10  11  12  13  14  15  16  17  18  19  20
                                 C   Q   T   L   T   E   S   E   P       V   V   I   K   P   G   G   S   H   Q
  AY238366,IGHV8S3*01           TGT CAG ACA CTA ACC GAG TCT GAG CCG ... GTG GTC ATT AAA CCT GGA GGA TCT CAT CAA

                                                        _________________CDR1-IMGT______________________
                                 21  22  23  24  25  26  27  28  29  30  31  32  33  34  35  36  37  38  39  40
                                 L   T   C   T   Y   S   G   I   S   D   S   D   A   A                   I   S
  AY238366,IGHV8S3*01           CTC ACC TGT ACC TAC TCT GGG ATT AGT GAT AGT GAT GCA GCT ... ... ... ... ATA TCC

                                                                                            _____________CDR2-IM
                                 41  42  43  44  45  46  47  48  49  50  51  52  53  54  55  56  57  58  59  60
                                 W   I   R   Q   A   Q   E   K   G   L   E   W   I   S   F   I   S   A   P   S
  AY238366,IGHV8S3*01           TGG ATT AGA CAG GCT CAA GAA AAA GGC CTT GAG TGG ATC TCA TTC ATT TCT GCT CCG AGT

                                GT__________________
                                 61  62  63  64  65  66  67  68  69  70  71  72  73  74  75  76  77  78  79  80
                                 G   S   T   K       Q   Y   S   E   S   V   Q       G   R   L   T   I   S   R
  AY238366,IGHV8S3*01           GGT AGT ACT AAA ... CAA TAC TCT GAG TCT GTT CAG ... GGA AGA CTC ACC ATC TCC AGA

                                 81  82  83  84  85  86  87  88  89  90  91  92  93  94  95  96  97  98  99 100
                                 D   N   R   K   K   Q   V   Y   L   H   M   T   S   L   K   T   E   D   T   A
  AY238366,IGHV8S3*01           GAC AAC AGG AAG AAA CAG GTG TAT CTG CAC ATG ACC AGC CTG AAG ACT GAA GAC ACT GCT

                                                _CDR3-IMGT_
                                101 102 103 104 105 106 107
                                 V   Y   Y   C   A   R   G
  AY238366,IGHV8S3*01           GTG TAT TAC TGT GCT CGG GGA #c
#c: rearranged cDNA

This alignment has been generated with the IMGT/AlleleAlign tool developed by Mehdi Yousfi (31/07/2001)

Created: 06/11/2003
Author: Nathalie Bosc